(† indicates equal contributions;  indicates undergraduate co-author; * indicates corresponding author)

27. Chi, H.; Zhou, Q.; Tutol, J. N.; Phelps, S. M.; Lee, J.; Kapadia, P.; Morcos, F.*; Dodani, S. C.* To be submitted. 

26. Baek, K.; Ji, K.; Peng, W.; Liyanaarachichi, S. M.; Dodani, S.C.*  “The design and synthesis of protein-based fluorescent sensors for ions in biology.” Protein Engineering, Design, and Selection2021, accepted

25. Chen, C.; Tutol, J. N.; Tang, L.; Zhu, L.; Ong, W. S. Y.; Dodani S. C.*; Fang, C.* “Excitation ratiometric chloride sensing in a yellow fluorescent protein is powered by the interplay between excited-state proton transfer and conformational reorganization.” Chemical Science, 2021, 12, 11382-11393. [PDF].

24. Tutol, J. N.; Lee, J.; Chi, H.; Faizuddin, F.; Abeyrathna, S. S.; Zhou, Q.; Morcos, F.; Meloni, G.; Dodani, S. C.* “A single point mutation converts a proton-pumping rhodopsin into a red-shifted, turn-on fluorescent sensor for chloride.” Chemical Science, 2021, 12, 5655-5663. [PDF]ChemRxiv. Preprint. [DOI: 10.26434/chemrxiv.13028192.v1].

23. Baglia, R. A., Mills, K. R., Mitra, K.; Tutol, J. N., Ball, D.; Page, K. M.; Kallu, J.; Gottipolu, S.; D’Arcy, S.; Nielsen, S. O., Dodani, S. C.* “An activity-based fluorescent sensor for the detection of the phenol sulfotransferase SULT1A1 in living cells.” RSC Chemical Biology, 2021, 2, 830-834. [PDF]; ChemRxiv. Preprint. [DOI:].

22. Gallentio, M. J.; Qasim, T. S.; Tutol, J. N.; Prakash, V.; Dodani, S. C.; Meloni, G.* “A recombinant platform to characterize the role of transmembrane protein hTMEM205 in Pt(II)-drug resistance and extrusion.” Metallomics 202012, 1542-1544. [PDF]

21. Ong, W. S. Y.; Smaldone, R. A.*; Dodani, S. C.* “A neutral porous organic polymer host for the recognition of anionic dyes in water.Chemical Science 202011, 7716-7721. [PDF]; ChemRxiv. Preprint. [DOI: 10.26434/chemrxiv.11556300.v1]

20. Kam, H.; Ranathunga, D. T. S.; Payne, E. R.; Smaldone, R. A.; Nielsen, S. O.; Dodani, S. C.* “Spectroscopic characterization and in silico modelling of polyvinylpyrrolidone as an anion-responsive fluorescent polymer in aqueous media.” Supramolecular Chemistry 201931, 514-522. Part of the Emerging Supramolecular Chemists in the United States Issue. [PDF]

19. Tutol, J. N.; Kam, H.; Dodani, S. C.* “Identification of mNeonGreen as a pH-dependent, turn-on fluorescent protein sensor for chloride.” ChemBioChem 201920, 1759-1765. Part of the ChemBioTalents Issue. (Cover article) [PDF]

18. Tutol, J. N.; Peng, W.; Dodani, S. C.* “Discovery and characterization of a naturally occurring, turn-on yellow fluorescent protein sensor for chloride.” Biochemistry 201958, 31-35. Part of the Future of Biochemistry: The International Issue. [PDF] [C&EN]

17. Boulet, A.; Vest, K. E.; Maynard, M. K.; Gammon, M. G.; Russell, A.C.; Mathews, A.T.; Cole, S. E.; Zhu, X.; Phillips, C. B.; Kwong, J. Q.; Dodani, S. C.; Leary, S. C.; Cobine, P. A. “The mammalian phosphate carrier SLC25A3 is a mitochondrial copper transporter required for cytochrome c oxidase biogenesis.” J. Biol. Chem. 2018, 293, 1887-1896. 

16. Herwig, L.; Rice, A. J.; Bedbrook, C. N.; Zhang, R. K.; Lignell, A.; Cahn, J. K. B.; Renata, H.; Dodani, S. C.; Cho, I.; Cai, L.; Gradinaru, V.; Arnold, F. H. “Directed evolution of a bright near-infrared fluorescent rhodopsin using a synthetic chromophore.” Cell Chem. Biol. 2017, 24, 1-11.

15. Dodani, S. C.*; Kiss, G.*; Cahn, J. K. B.; Su, Y; Pande, V. S.; Arnold, F. H. “Discovery of a regioselectivity switch in the nitrating cytochrome P450 TxtE guided by MD simulations and Markov models.” Nat. Chem. 2016, 8, 419-425. (Cover article)

14. Dodani, S. C.*; Firl, A.*; Chan, J.*; Nam, C. I.; Onak, C.; Feller, M. F.; Chang, C. J. “Copper is an endogenous modulator of neural circuit spontaneous activity.” Proc. Natl. Acad. Sci. USA 2014, 111, ‍16280-16285. (Highlighted by LBNL News, Chem. Eng. News, and R&D Magazine)

13. Hong-Hermesdorf, A.; Miethke, M.; Gallaher, S. D.; Kropat, J.; Dodani, S. C.; Chan, J.; Barupala, D.; Domaille, D. W.; Shirasaki, D. I.; Loo, J. A.; Weber, P. K.; Pett-Ridge, J.; Stemmler T. L.; Chang, C. J.; Merchant, S. S. “Subcellular metal imaging identifies dynamic sites of Cu accumulation in Chlamydomonas.” Nat. Chem. Biol. 2014, 10, 1034-1042.

12. Heel, T.; McIntosh, J. A.; Dodani, S. C.; Meyerowitz, J. T.; Arnold, F. H. “Non-natural olefin cycloproponation catalyzed by diverse cytochrome P450s and other hemoproteins.” ChemBioChem 2014, 15, ‍2556-2562.

11. Dodani, S. C.; Cahn, J. K. B.; Heinisch, T.; Brinkmann-Chen, S.; McIntosh, J. A.; Arnold, F. H. “Structural, functional, and spectroscopic characterization of the substrate scope of the novel nitrating cytochrome P450 TxtE.” ChemBioChem 2014, 15, ‍2259-2267.

10. Garcia-Molina, A.; Andrés-Colás, N.; Perea-García, A.; Neumann, U.; Dodani, S. C.; Huijser, P.; Peñarrubia, L.; Puig, S. “The Arabidopsis COPT6 transport protein functions in copper distribution under copper-deficient conditions.” Plant Cell Physiol. 2013, 54, ‍1378-1390.

9. Cusick, K. D.; Wetzel, R. K.; Minkin, S. C. Jr.; Dodani, S. C.; Wilhelm, S. W.; Sayler, G. S. “Paralytic shellfish toxins inhibit copper uptake in Chlamydomonas reinhardtii.” Environ. Sci. Technol. 2013, 32, ‍1388-1395.

8. Chan, J.; Dodani, S. C.; Chang, C. J. “Reaction-based small-molecule fluorescent probes for chemoselective bioimaging.” Nat. Chem. 2012, 4, 973-984.

7. Bernal M.; Casero D.; Singh V.; Wilson G. T.; Grande, A.; Yang H.; Dodani, S.C.; Pellegrini, M.; Huijser, P.; Connolly, E. L.; Merchant S. S.; Krämer, U. “Transcriptome sequencing identifies SPL7-regulated copper acquisition genes FRO4/FRO5 and the copper dependence of iron homeostasis in arabidopsis.” Plant Cell. 2012, 24, ‍2738-2761.

6. Cusick, K. D.; Minkin, S.; Dodani, S. C.; Chang, C. J.; Wilhelm, S. W.; Sayler, G. S. “Inhibition of copper uptake in yeast reveals that the copper transporter Ctr1p as a potential molecular target of saxitoxin.” Environ. Sci. Technol. 2012, 45, ‍2959-2966.

5. Beadoin, J.; Ioannoni, R.; Lopez-Maury, L.; Bahler, J.; Ait-Mohand, S.; Guerin, B.; Dodani, S.C.; Chang, C.J., Labbe, S. “Mfc1 is a novel forespore membrane copper transporter in meiotic and sporulating cells.” J. Biol. Chem. 2011, 286, ‍34356-34372.

4. Dodani, S. C.; Leary, S. C.; Cobine, P. A.; Winge, D. R.; Chang, C. J. “A targetable fluorescent sensor reveals that copper-deficient SCO1 and SCO2 patient cells prioritize mitochondrial copper homeostasis.” J. Am. Chem. Soc. 2011, 133, ‍8606-8616.

3. Dodani, S. C.*; Domaille, D. W.*; Nam, C. I.*; Miller, E. W.; Finney, L. A.; Vogt, S.; Chang, C. J. “Calcium-dependent copper redistributions in neuronal cells revealed by a fluorescent copper sensor and X-ray fluorescence microscopy.” Proc. Natl. Acad. Sci. USA 2011, 108, ‍5980-5985.

2. Moore, E. G.; Xu, J.; Dodani, S. C.; Jocher, C. J.; D’Alo, A.; Seitz, M.; Raymond, K. N. “1-Methyl-3-hydroxy-pyridin-2-one complexes of near infra-red emitting lanthanides: efficient sensitization of Yb(III) and Nd(III) in aqueous solution.” Inorg. Chem. 2010, 49, ‍4156-4166.

1. Dodani, S. C.; He, Q.; Chang, C. J. “A turn-on fluorescent sensor for detecting nickel in living cells.” J. Am. Chem. Soc. 2009, 131, ‍18020-18021.