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Michael Zhang Computational Biology Laboratory
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Members

Members

Michael Q. Zhang

Professor and Cecil H. and Ida Green Distinguished Chair of Systems Biology Science

Department of Biological Sciences

972-883-2523 RL 4.746 Mailstop - RL11

  • michael.zhang@utdallas.edu


Graduate Students

Khyati Raghunath Chandratre

Doctoral candidate

Department of Biological Sciences

Khyati Raghunath Chandratre is a Doctoral candidate and GRACE Fellowship awardee in the Zhang Lab. She investigates the changes in 3D genome organisation in different prostate cancer cell lines to study transcription dysregulation by integrating chromatin data,  multi-omics data (ChIP-Seq & RNA-Seq) and machine learning.

  • khyati.chandratre@utdallas.edu

Xingyu Chen

Doctoral student

Department of Biological Sciences

Xingyu’s research focuses on using applied machine learning / deep learning models to investigate and simulate the intricate process of tissue and organ boundary formation during the early developmental stages of C.elegans worms, uncovering critical insights into gene regulated cellular morphology.

  • xingyu.chen2@utdallas.edu

Maithri Murali

Doctoral student

Department of Biological Sciences

Maithri’s research is centered on computationally studying the developmental systems of C. elegans. Its inherent invariance leads to exceptional experimental reproducibility, making it an ideal organism for exploring fundamental biological processes. Currently, her work involves predicting and modelling critical developmental events in the worm gut.

  • maithri.murali@utdallas.edu

ChengCheng Liu

Doctoral student

Department of Biological Sciences

Chengcheng Liu’s research aims to combine single-cell sequencing (scRNA-seq, scATAC-seq), bulk transcriptomics, and whole genome sequence approaches to study cancer development.

  • chengcheng.liu@utdallas.edu

Post Doctorate

Ben Niu

Research Scientist

Department of Biological Sciences

Dr. Ben Niu studies Systems Biology with mathematical and machine learning approaches. He is currently focusing on understanding how gene expression regulation controls early embryogenesis using C. elegans as the model organism. His is specialised in data mining, image pattern recognition, bioinformatics, mathematical modelling and software engineering.

  • ben.niu@utdallas.edu

Visiting Scholar

Ahmed Abbas Elamahdi

Research Guest

Department of Biological Sciences

Dr. Ahmed Abbas Elmahdi interested in applying machine learning techniques to analyze and predict three-dimensional genome organisation.

  • ahmed.abbaselmahdi@utdallas.edu

Previous Members

Thao Nguyen Bach

Thao Nguyen Bach

Graduate Student

  • txb170530@utdallas.edu

Yongqiang Xing

Yongqiang Xing

Visiting Scholar

  • imustxyq@gmail.com

Yang Yang

Yang Yang

Post-Doctoral Researcher

  • yang.yang30@utdallas.edu

Chen Jia

Chen Jia

Post-Doctoral Researcher

  • jiac@utdallas.edu

Yong Chen

Yong Chen

Post-Doctoral Researcher

  • yong.chen1@utdallas.edu

Group Pictures

  • The University of Texas at Dallas
  • Department of Biological Sciences